Hypericum nagasawai is an endemic perennial herb that grows on rocky slope, streambanks and roadside in the high mountain areas of Taiwan. In total 256 clones randomly selected from 8 populations were electrophoretically analyzed for 16 isozyme loci. Although it is endemic to the island, compared with other similarly geographic range flowering plants, 0.169 of average expected heterozygosity and 64.3% polymorphic loci, H. nagasawai possesses higher amount of genetic variation. Levels of Wright's gene fixation F were not significantly different from 0 (FIS=0.005; FIT=0.067), indicating possible geneflow and a random mating strategy. Since the small magnitude of FST , the homogenous distribution of genetic variation represented little genetic differentiation among the studied populations. Cluster analysis based on Nei's unbiased genetic distance illustrated genetic structure within this species. It is congruent with the morphological survey, showing two major groups segregating in a north-south distribution, with little genetic isolation. In regards to the ambiguous systematic relationship between highly related H. nagawasai and H. nokoense, possibly frequent genetic exchange and sympatric habitat could be the possible reasons why they are systematically different taxa but yet not having recognizable differences.

Key words: genetic differentiation,genetic diversity,Hypericaceae,Hypericum nagasawai,Isozyme